SNP Profiles matching ICS 16

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
1._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
2._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
3._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
4._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
5._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
6._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
7._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
8._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
9._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
10._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
11._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
12._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
13._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
14._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
15._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
16._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
17._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
18._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
19._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
20._PA_90_[PER]	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
21._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
22._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
23._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
24._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	_	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
1._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
2._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
3._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
4._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
5._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
6._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
7._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
8._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
9._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
10._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
11._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
12._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
13._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
14._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
15._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
16._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
17._ICS_16	CT	AA	_	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
18._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
19._GC-08-067-1-89	CT	AA	_	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
20._PA_90_[PER]	CT	AA	CG	CT	CC	GG	-	AA	CT	AC	GG	TT	CT	AA
21._PA_150_[PER]	CC	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC
22._PA_150_[PER]	CC	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC
23._PA_150_[PER]	CC	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC
24._PA_150_[PER]	CC	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
1._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
2._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
3._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
4._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
5._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
6._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
7._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
8._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
9._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
10._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
11._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
12._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
13._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
14._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
15._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
16._ICS_16	AG	GG	AA	_	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
17._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
18._GC-08-067-1-89	AG	GG	AA	_	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
19._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
20._PA_90_[PER]	AG	GG	AA	CC	GG	-	AA	CC	GG	AC	AA	GG	X_X	X_X
21._PA_150_[PER]	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
22._PA_150_[PER]	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
23._PA_150_[PER]	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
24._PA_150_[PER]	AG	GG	AA	CC	GG	_	AA	CC	GG	AC	AA	GG	X_X	X_X

Input profile: ICS_16

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Mars Center for Cocoa Science, Brazil

Location: 8189 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._ICS_16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 5 > FP

Dapeng Zhang, 2016

2._ICS_16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 3 > FP

Dapeng Zhang, 2016

3._ICS_16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 1 > FP

Dapeng Zhang, 2016

4._ICS_16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 12

Dapeng Zhang, 2016

5._ICS_16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 8

Dapeng Zhang, 2016

6._ICS_16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 7

Dapeng Zhang, 2016

7._ICS_16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 6

Dapeng Zhang, 2016

8._ICS_16 GC-08-067-1-89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._ICS_16 GC-08-067-1-89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._ICS_16 GC-08-067-1-89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

11._ICS_16 GC-08-067-1-89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

12._ICS_16 GC-08-067-1-89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._ICS_16 GC-08-067-1-89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._ICS_16 GC-08-067-1-89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._ICS_16 GC-08-067-1-89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

16._ICS_16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 9 > FP

Dapeng Zhang, 2016

17._ICS_16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 10

Dapeng Zhang, 2016

18._ICS_16 GC-08-067-1-89

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

19._ICS_16 GC-08-067-1-89

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

20._PA_90_[PER]

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 627

Dapeng Zhang, 2014

21._PA_150_[PER]

91.3 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P70 1019

Dapeng Zhang, 2016

22._PA_150_[PER]

91.3 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row4 C0183 28

Dapeng Zhang, 2016

23._PA_150_[PER]

91.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 679

Dapeng Zhang, 2016

24._PA_150_[PER]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D679

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25